How-to: asap cluster
=========

``asap cluster sub_command`` is for performing clustering of the data. One can do the cluster using the high-dimensional design matrix generated by ``asap gen_desc``, or the low-dimensional projections of the design matrix generated by the command ``asap map``. 

Overview of sub-commands
------------------------

==========  =======================================
option      description 
==========  =======================================
  dbscan    Density-based spatial clustering of applications with noise...
  fdb       Clustering by fast search and find of density peaks (FDB)
  plot_pca  Plot the clustering results using a PCA map.
==========  =======================================

.. note::  ``plot_pca`` does **not** perfrom the clustering task. 
    it is only used to plot the clustering results using a PCA map.
    it should be used following a clustering command, e.g.
    ``asap cluster -f some.xyz -dm '[*]' fdb plot_pca``

.. click:: asaplib.cli.cmd_asap:cluster
   :prog: asap cluster
   :nested: full

.. note::  More documentation to be added.