How-to: asap map
=========

``asap map sub_command`` is for making low-dimensional projections of the design matrix generated by the command ``asap gen_desc``. 

Overview of sub-commands
------------------------

sub-commands that controls which algorithm to use for the dimensionality reduction:

=======  =======================================
option   description 
=======  =======================================
  pca    Principal Component Analysis
  raw    Just plot the raw coordinates
  skpca  Sparse Kernel Principal Component Analysis
  tsne   t-SNE
  umap   UMAP
=======  =======================================


.. click:: asaplib.cli.cmd_asap:map
   :prog: asap map
   :nested: full

.. note::  More documentation to be added.